Use distance method to detect 8 residues
Tried on 1bww and 1kcl
pretty strait forward, just check contact of those four strands(including side chain),
mark contacts residues between non-H-bond strands,
pick two residues on each strand which 1) there's a residue between them. 2)from these two residues, you can contact with 3 other strands.
then, you'll have 8 residues.
by this way, we know 8 residues in hbalign_9_19.xls are wrong,
two residues of 1kcl on K strand are not Y and V, should be W and Y.
example process as flow
pretty strait forward, just check contact of those four strands(including side chain),
mark contacts residues between non-H-bond strands,
pick two residues on each strand which 1) there's a residue between them. 2)from these two residues, you can contact with 3 other strands.
then, you'll have 8 residues.
by this way, we know 8 residues in hbalign_9_19.xls are wrong,
two residues of 1kcl on K strand are not Y and V, should be W and Y.
example process as flow
1bww A | |
3 4 8 9 | |
3 | 8 |
23@ | 71 |
25#! | 72 |
73*% | |
74* | |
75*$ | |
77$ | |
88$@ | 35%! |
90# | 37*@! |
9 | 4 |
ANS: | 23,25,35,37,75,77,88,90:A |
1kcl A 582 686 | |
34 35 36 37 | |
34 | 36 |
591$! | 634@ |
593#@% | 635@ |
596% | 636@% |
598% | 638! |
640! | |
650$! | 604% |
652$#%! | 606! |
653% | |
654% | |
37 | 35 |
ANS: | 591,593,604,606,636,638,650,652:A |
0 Comments:
Post a Comment
<< Home