Use distance method to detect 8 residues
						
						  Tried on 1bww and 1kcl
pretty strait forward, just check contact of those four strands(including side chain),
mark contacts residues between non-H-bond strands,
pick two residues on each strand which 1) there's a residue between them. 2)from these two residues, you can contact with 3 other strands.
then, you'll have 8 residues.
by this way, we know 8 residues in hbalign_9_19.xls are wrong,
two residues of 1kcl on K strand are not Y and V, should be W and Y.
example process as flow
						
						
						
					  
					  pretty strait forward, just check contact of those four strands(including side chain),
mark contacts residues between non-H-bond strands,
pick two residues on each strand which 1) there's a residue between them. 2)from these two residues, you can contact with 3 other strands.
then, you'll have 8 residues.
by this way, we know 8 residues in hbalign_9_19.xls are wrong,
two residues of 1kcl on K strand are not Y and V, should be W and Y.
example process as flow
| 1bww A | |
| 3 4 8 9 | |
| 3 | 8 | 
| 23@ | 71 | 
| 25#! | 72 | 
| 73*% | |
| 74* | |
| 75*$ | |
| 77$ | |
| 88$@ | 35%! | 
| 90# | 37*@! | 
| 9 | 4 | 
| ANS: | 23,25,35,37,75,77,88,90:A | 
| 1kcl A 582 686 | |
| 34 35 36 37 | |
| 34 | 36 | 
| 591$! | 634@ | 
| 593#@% | 635@ | 
| 596% | 636@% | 
| 598% | 638! | 
| 640! | |
| 650$! | 604% | 
| 652$#%! | 606! | 
| 653% | |
| 654% | |
| 37 | 35 | 
| ANS: | 591,593,604,606,636,638,650,652:A | 
 
					

0 Comments:
Post a Comment
<< Home