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Saturday, January 27, 2007

not finished pattern for 3B


0:[lvmicyfwa]
1:[rkhdeqnstpg]

3B

[lvmicyfwa][rkhdeqnstpg].{1,4}[rkhdeqnstpg][rkhdeqnstpg].{0,1}[lvmicyfwa].[lvmicyfwa].[lvmicyfwa][rkhdeqnstpga].{1,2}[rkhdeqnstpg].{0,1}[rkhdeqnstpg].[rkhdeqnstpgy].{0,3}[rkhdeqnstpga].{0,2}[lvmicyfwa].[lvmicyfwa].{2,7}[rkhdeqnstpg][rkhdeqnstpg][rkhdeqnstpg].{1,5}[lvmicyfwa][lvmicyfwa].{1,5}[rkhdeqnstpg][rkhdeqnstpg].{0,2}[rkhdeqnstpg].{0,4}[rkhdeqnstpg].{0,1}[rkhdeqnstpga][rkhdeqnstpg].{0,6}[rkhdeqnstpg][lvmicyfwa].{1,8}[rkhdeqnstpg][rkhdeqnstpg].{0,3}[rkhdeqnstpg][lvmicyfwa].[lvmicyfwa].{2}[lvmicyfwa][rkhdeqnstpg].[rkhdeqnstpg][rkhdeqnstpgf].{3}[lvmicyfwag].[lvmicyfwa].[lvmicyfwas].{0,2}[rkhdeqnstpg].[rkhdeqnstpg][rkhdeqnstpg].{0,5}[lvmicyfwa][rkhdeqnstpg].{2,4}[lvmicyfwa].{0,4}[lvmicyfwa]{0,1}

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain}
gitqspkylfrkegqnvtlsceqnlnhdamywyrqdpgqglrliyysqivndfqkgdiaegysvsrekkesfpltvtsaqknptafylcasssrssyeqyfgpgtrltvtedlk

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain}
dkvtqsspdqtvasgsevvllctydtvysnpdlfwyrirpdysfqfvfygddsrsegadftqgrfsvkhiltqkafhlvispvrtedsatyycaftlppptdklifgkgtrvtvep

>d1neu__ b.1.1.1 (-) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus)}
ivvytdrevygavgsqvtlhcsfwssewvsddisftwryqpeggrdaisifhyakgqpyidevgtfkeriqwvgdpswkdgsivihnldysdngtftcdvknppdivgktsqvtlyvfe

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens)}
farslsittpeemiekakgetaylpckftlspedqgpldiewlispadnqkvdqviilysgdkiyddyypdlkgrvhftsndlksgdasinvtnlqlsdigtyqckvkkapgvankkihlvvlv

>d1cdy_1 b.1.1.1 (1-97) CD4 V-set domains {Human (Homo sapiens)}
kkvvlgkkgdtveltctasqkksiqfhwknsnqikilgnqgsfltkspsklndradsrrslwdqgnfpliiknlkiedsdtyicevedqkeevqllv

>d1cid_1 b.1.1.1 (1-105) CD4 V-set domains {Rat (Rattus rattus)}
tsitayksegesaefsfplnlgeeslqgelrwkaekapssqswitfslknqkvsvqkstsnpkfqlsetlpltlqipqvslqfagsgnltltldrgilyqevnlv

>d1hnf_1 b.1.1.1 (4-104) CD2, first domain {Human (Homo sapiens)}
tnaletwgalgqdinldipsfqmsddiddikwektsdkkkiaqfrkeketfkekdtyklfkngtlkikhlktddqdiykvsiydtkgknvlekifdlkiqe

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus)}
dsgtvwgalghginlnipnfqmtddidevrwergstlvaefkrkmkpflksgafeilangdlkiknltrddsgtynvtvystngtrilnkaldlrile

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens)}
fsqqiygvvygnvtfhvpsnvplkevlwkkqkdkvaelensefrafssfknrvyldtvsgsltiynltssdedeyemespnitdtmkfflyvl

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens)}
vihvtkevkevatlscghnvsveelaqtriywqkekkmvltmmsgdmniwpeyknrtifditnnlsivilalrpsdegtyecvvlkyekdafkrehlaevtlsvk

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens)}
mlkiqayfnetadlpcqfansqnqslselvvfwqdqenlvlnevylgkekfdsvhskymgrtsfdsdswtlrlhnlqikdkglyqciihhkkptgmirihqmnselsvla

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus)}
kgsvytaqsdvqvpenesikltctysgfssprvewkfvqgsttalvcynsqitapyadrvtfsssgitfssvtrkdngeytcmvseeggqnygevsihltvl

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens)}
amgsvtvhssepevripennpvklscaysgfssprvewkfdqgdttrlvcynnkitasyedrvtflptgitfksvtredtgtytcmvseeggnsygevkvklivl


http://www.cs.nyu.edu/~ysc212/bioinfo/scop/scoptest/scoptest2.html

48729
48731
48738
48739
48741
48742
48744
48746
48748
48937
48938
63636
89180

1N0X-L
1PEW-A
2CD0-A
1ADQ-L
1W72-L
1NFD-E
1I7Z-B
1DL7-H
1AC6-A
1OGA-E
1TVD-A
1PY9-A
1EAJ-A
1CDY
1CID
1HNF
1HNG-A
1CCZ-A
1QA9-B
1DR9-A
1NCN-A
1F97-A
1NBQ-A
1XE0-A
1OGM-X
1LTO-A
1QFM-A
1H80-A
1WCH-A
1N5M-A
1JIX-A
1JDP-A

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