My Photo
Name:
Location: New York, New York, United States

我叫江奕賢啦

Wednesday, October 26, 2005

problems in barrel

  • can't detect by only looking to one strand, can be detected by see two strands. The core seems to content four strands (1pdr)
  • strand is too short in pdbsum, but since it's bended, it should be short in pdbsum. (1kef A)
  • check "1nte A", how do you know which loop of strand 4 should be considered as strand?

Due to problem2 and problem3, check two strands or more didn't help. Because you don't even know where the strands start and end.

I think we should monitor the direction of the strands no matter it's sheets or loop, but I didn't find out a good way yet.

0 Comments:

Post a Comment

<< Home