note 070312

NBTree:86%/77%
J48:95%/79%
ADTree:74%/
VotedPerceptron:67%/
bayesnet:70%/
VFI:68%/
OneR:66%/
DecisionTable:79%/
IB1:/78%
KStar:99.9%/81.45
LWL:69%/
IBk:/79%

Structure prediction server (give you MultipleAlignment, SSE, R-R Contact, 3D)
http://www.soe.ucsc.edu/research/compbio/SAM_T06/T06-query.html
Warnning, take at least 2 hours.

emboss in umdnj
http://siriusc.umdnj.edu/emboss/

Muscle: Good Alignment Server (better then ClustalW)
JalView: Good Alignment Editer ()


5 4 8 9 2
6 7 3 1

E,J,J,NJ,E,NJ,J,NE
1 3 7 6
2 9 8 4 5

adtree => excel
sum>2.5

1F 27

TP=14=14/27=52%
FP=13=13/27
TN=653=653/693
FN=13=13/693

correct=14+653=667/693=96%

TP=14/(27-8sao)=74%
: -0.142
(1)ENE = NE: 0.12
(2)looplen <>= 2.5: -0.132
(3)nENE = NE: -0.124
(3)nENE = E: 0.767
(1)ENE = E: -0.732
(4)str2len <>= 3.5: -0.104
Legend: -ve = JP, +ve = NJP