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Thursday, November 03, 2005

contact residues in barrel


1bia A
init 278 285 289 300 302 309

307/ 309= 311$
+-= x*%+- %=


298- 300+
%=\^ *%=/\^?,&

280# 283x 285* 286, 287? 289%=$ %= %+=& +& +& +-^&


276& 278%
*+\^?, x*+-=^$

314^
&%-\+&

ans: 276 278 280 285 289 298 300 302 309 311 314

seems like the bended strand is caused by a missed residue side chain (ex:Glu)
all 2x2 matrix are hydrophobic / side chains are inside.

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