testing rmsd

1aqk 10,18,20,22,37,49,65,75,77,87,88,90,106,107,109,110;

1ie5 origenal
21,31,33,35,47,54,64,72,74,84,85,87,101,102,104,105;
1.56A

moved same direction in space one residue (some already in loop)
20,30,32,34,46,55,65,71,73,85,86,88,100,101,103,104;
3.85A

moved same direction in sequence one residue
20,30,32,34,46,53,63,71,73,83,84,86,100,101,103,104;
4.38A

moved only one strand
21,30,32,34,47,54,64,72,74,84,85,87,101,102,104,105;
2.41A

-------------another case--------------
origenal 1aqk vs 1kv3
$S1KV3 = select in "1KV3" num 31,39,41,43,59,77,91,102,104,116,117,119,134,135,137,138;
2.14A

shift 1kv3 by 2 residues
$S1KV3 = select in "1KV3" num 33,37,39,41,61,75,89,104,106,114,115,117,136,137,139,140;
2.17A

shibata's
$S1KV3 = select in "1KV3" num 33,37,39,41,59,76,89,104,106,115,116,118,136,137,139,140;
2.29A